scATAC-seq Fragment Tools

Tools for manipulating scATAC-seq fragment files.

Installation

Requires python version >=3.8 and <= 3.12

From pypi:

> pip install scatac_fragment_tools

From source:

> git clone https://github.com/aertslab/scatac_fragment_tools.git
> cd scatac_fragment_tools
> pip install.

Testing installation

> scatac_fragment_tools
Usage: scatac_fragment_tools [-h] {bigwig,split} ...

scATAC-fragment-tools (v0.1.0): Tools for processing scATAC-seq fragments.

Options:
  -h, --help      show this help message and exit

Subcommands:
  {bigwig,split}